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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST004524
species: Oryza sativa
miRNA family: miR160g
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCGTGCAAGGAGCCAAGCATG

miRNA*
 TGCCTGGCTCCCTGTATGCCA

mismatches: 2
bulges: 0
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pre-miRNA
 CTTGAGAGCGTGCCTGGCTCCCTGTATGCCACTCATGTAGCCCAATCCATGGTGTGTTTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCGTGCC
A

dot-bracket secondary structure
.......((((((.(((((((.((((((((((((((..(((...(((((.........)))))))))))))))))))))).))))))).)))))).....
.


SIMILARITIES
miRBase osa-MIR160b: 1e-52

PMRD osa-miR160b: 1e-52

microPC miR160: 7e-39		UniProt no hits

RFAM mir-160: 1e-43		most similar mature miRNAs

Identical with: osa-MIR160b from miRBase (MNEST041924)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence




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